Scaffold Ga0098074_1003569

Overview

Basic Information

• Taxon OID: 3300006790
• Scaffold ID: Ga0098074_1003569
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6416
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000479	Metagenome / Metatranscriptome	1092	Y
F001689	Metagenome / Metatranscriptome	651	Y
F002859	Metagenome / Metatranscriptome	525	Y
F004549	Metagenome / Metatranscriptome	433	Y
F033764	Metagenome	176	Y
F063608	Metagenome	129	Y
F071754	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_10035691	F001689	AGGA	MKLKKDYEMTFKEGFRLGVRLTRAKACLENARNAKILNDESMVKLQMEFANDWTDLAKNSGRKFTPITAHEPEQSAFDFGDIEYQEHLSKLPFKETG*
Ga0098074_100356911	F071754	AGGAGG	MSINLPNSPVRKIFKCDNCDNYHIKFFDPKHDRTYTPSEWEQIVTDGKEALYKALQVVREDPKFFA*
Ga0098074_100356913	F033764	AGGAG	MHVDKYVVNNIGTKWTNGKSKKNQVLDSLDGTNGIQLKKLVPLLEEWFETVNGEWAHRNVELIINVKEEK*
Ga0098074_100356914	F002859	AGGAG	VLVIIRPDLYEYTALPMTDDLFWRRVENLRRAALTAEDFEFRLVYYNQMVELMKRCP*
Ga0098074_100356918	F000479	AGGA	MSKAVNIIEVLEKAHQSKASVSKRNKQAIIDAYGRALTMQKVLADFIKVNRQLMIDLAFGENANLLHGKDYSLHVQQKLGAKIDTNLVKEKLGELEYHKCKVPTEYKTIQAMPLSESTISRNKKATIDEVADFRITA*
Ga0098074_10035692	F004549	AGGA	MNIKKFKSVAVAIDTYKLLKKLAAADDRSAGMQITYLVKQEAKKRKLAA*
Ga0098074_10035695	F063608	AGGAGG	MAKKDSLRTRLLREYAKVSKVAVRDPRNWKEVANRVRWERLKKILWRRYDYMQSL*