Scaffold Ga0098074_1002354

Overview

Basic Information

• Taxon OID: 3300006790
• Scaffold ID: Ga0098074_1002354
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8598
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010091	Metagenome / Metatranscriptome	308	Y
F014085	Metagenome / Metatranscriptome	266	Y
F022423	Metagenome / Metatranscriptome	214	Y
F040134	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_100235410	F022423	AGAAG	MQDLNFITQTVAEMTSRVESVETVNKIIGTANQYAQVKKFPASKELWSDEQVGAYLDMIERMLDLPTEFTQAEFETMSIQEKLSAAGIETIDITNGPQTPEGIVGEVVNQMAEQNKYRDDLKCPYCQQMVYDNRNSKRSDKSPDFTCSTNNPAECGGHTGKWRKSWWIDNSDIPEEWGI*
Ga0098074_100235412	F040134	N/A	MKTMTNIDTKSSWTLTGIEYSGLGDKPYFILTNINGECKLVPIEKGVHNLRNLLDLDKE*
Ga0098074_100235414	F010091	N/A	MNSMNIDDMLYEAENGKRSPILDRITEEAEPFWQGCEERVKSGRNIKPYVVSRLLKEQYGIKISESAVRNHFENLANLGSQYE*
Ga0098074_10023545	F014085	GGA	VDSLSPLREEALKRAGGRCEWAYCTDNKWLELAHIQGIGMGGSKKRKFDINNVAILCKHHHDIYDGRQRVGTSVAYRDLLKGYLKRESTII*