Scaffold Ga0098074

Basic Information
Taxon OID	3300006790 Open in IMG/M
Scaffold ID	Ga0098074_1002258 Open in IMG/M
Source Dataset Name	Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006790 Open in IMG/M

Scaffold ID

Ga0098074_1002258 Open in IMG/M

Source Dataset Name

Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8842
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8842

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (93.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Atlantic Ocean: Gulf of Mexico
Coordinates	Lat. (^o)	28.867	Long. (^o)	-90.467	Alt. (m)	Depth (m)	18
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: Gulf of Mexico

Coordinates

Lat. (^o)

28.867

Long. (^o)

-90.467

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002942	Metagenome	518	Y
F004131	Metagenome	451	Y
F028791	Metagenome	190	N
F064684	Metagenome	128	Y
F101059	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_100225810	F064684	AGG	MNNEQRIAQAAMTIAGSIFEDADQSTLVDKLRHCCEWRNQGTDGDLTQADRESLRLLLDEAEAAAGVCLY*
Ga0098074_100225811	F004131	GAGG	MRAKRITVVADVSQFPFSVMRRQLITPLVREAAELLWPAEQRRVTVLLRAPEYWDECTSADLEASEELADICFDLWVGARG*
Ga0098074_100225812	F002942	GGTGG	MSDEQFTAFVILLAAVSLPSVSLLFAMAWDLWQYAKQGEQR*
Ga0098074_100225815	F028791	GGAGG	MKIVNVDWMKWLNVLAVLAVLAGGAEVQAQGYDNILWSPKIDDIPETPFLPVIQDDKGELLAHSSENIWGMVWTSLPEDGLNNHHKREFSVGDYHYLVENRIPSPVEDDWSIGGTLHHRNGALDFHSARRYYAYASVEQKWAAQEAGWIHIPINADHEGHWVMINGQIVWEI
Ga0098074_10022587	F101059	GGAGG	MTFDFDFSELDSIGAGDPFAINSGSSGRPSPGCGLVQILSWSEYTGANGKAHELEFELIAWSVADDVGKTFTENIFHQDNTGKGWPKKRMLCLAAVTGLLTPTAMQAAKAAGQAVSLDMQQLVGRVMMVQLIEEPSQNDPTKSYLKVGGAGVAMYHVDDHRCAKWPKNDAVIAAKRDLIGTLPQPTAAAAPQSKPATEQASKPNYDDDLPF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098074_1002258

Overview

Ecosystem & Geography

Associated Families

Sequences