Scaffold Ga0098074_1001899

Overview

Basic Information

• Taxon OID: 3300006790
• Scaffold ID: Ga0098074_1001899
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9979
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002282	Metagenome	575	Y
F069445	Metagenome	124	Y
F091888	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_100189912	F091888	AGGAGG	MKYTLVKRVTFSYKGAQDAVSIVKEANSLEDALKYKVGAEMLEEPADNKKFQVLINIDDAFDYIKEPAKPLLLTDEVKGQKAS*
Ga0098074_100189914	F002282	N/A	MMSEADIIEYNKLTEQLELLKKKGAPVDDRGPADLTKRIEILEFRNEKLHQYNEKLIEEIRSLRSQLYVKGN*
Ga0098074_100189921	F069445	AGGAG	MKKEKGRTFDGITRPSNETYRKNFNEIFGKKPEIDLKGTVFCKAKKCNNHLYKNESASLPGYCMECG*