Scaffold Ga0098074_1001510

Overview

Basic Information

• Taxon OID: 3300006790
• Scaffold ID: Ga0098074_1001510
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11718
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022392	Metagenome / Metatranscriptome	214	N
F052203	Metagenome / Metatranscriptome	143	Y
F071138	Metagenome / Metatranscriptome	122	N
F103098	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_100151014	F052203	AGGA	MQKVQTKTARPVRVILNTQNSNRHQWAKIVEGKKILHTGQPRYIKRVAKQKFNLDLMF*
Ga0098074_100151016	F071138	GAGG	MFKVTVSDVESFGRDYFTTTRVAFGKSPKQAWAKLYRYNGEHTVSGGHPEGYGGTPVLQMRRLEKDGKMLSEIWD*
Ga0098074_100151023	F103098	GGAG	MLNAKNVDRVEDCGNGFGWSIIHFDDEFYGNCYEFAVLRDGALCYDSGVTSDVVRGDWTLMDKLKCMVQDLHSDRLAS*
Ga0098074_100151024	F022392	GAGG	MKSFNITIIEPWSGREVRHLDVPQSQLKDIDGETWFTGYNEAIEVITAEPVSEESQAAKAAYFAKWGTANE*