Scaffold Ga0098074_1000998

Overview

Basic Information

• Taxon OID: 3300006790
• Scaffold ID: Ga0098074_1000998
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15951
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (91.18%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000200	Metagenome / Metatranscriptome	1633	Y
F002858	Metagenome / Metatranscriptome	525	Y
F008883	Metagenome / Metatranscriptome	326	Y
F016819	Metagenome / Metatranscriptome	244	Y
F023856	Metagenome / Metatranscriptome	208	Y
F026889	Metagenome / Metatranscriptome	196	N
F056586	Metagenome	137	N
F073499	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_100099810	F056586	AGGAGG	VKQTYQVIMTKVYEVKVEAESREQAEEIFDNFGDWEELLRVHTLDVEPADYLTLREED*
Ga0098074_100099812	F008883	GAGG	MNFGRYTIWYNHEDHVWDIYDGRKGFKYPEYTINNYSRLLCGLRDKLGFLDTDKNHRRFWGVLRWWSKLRHGRYSPWN*
Ga0098074_100099813	F026889	AGGAGG	MNNVIEEYLALVERTVYHRDLDAFDALEQLEEDCPELVDLVYQSAGPLAYDIQNNEVIS*
Ga0098074_100099824	F016819	AGGAG	MRTLLVAIMLLSLQASADTKILIEKADQQYVVIPSCNVSEDATQVAIQRLRVGAPVYIRHKGRQVRCTIENYYQVRS*
Ga0098074_10009983	F073499	AGGAGG	MTEQELEQWLRDNPWKANVICPAGGIGFMMFLMYFFIQVIDSF*
Ga0098074_100099830	F000200	AGAAG	MFKIYDFRCANGHVFEEMVESGVTTSRCGCGANATKMVSAPSFHLDGSTGDFPGQHMKWVREHEKAGRK*
Ga0098074_10009985	F002858	AGGAG	MAIDEKSIYLVDGGDYQIYCFGYTQARTVTNDIMKRDPWGGIPFVYEQDQLEVSFDDKGNVVMPRAVLDKILFIASDELPQAEDD*
Ga0098074_10009986	F023856	GGAGG	MRCRACDRILEESELTRKDTHGDFLDLCGICLSATASAGVDTETMEYYQYEIFTEDEKYDTLY*