Scaffold Ga0098074_1000577

Overview

Basic Information

• Taxon OID: 3300006790
• Scaffold ID: Ga0098074_1000577
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23570
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030441	Metagenome / Metatranscriptome	185	Y
F077364	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_100057727	F030441	AGGA	MTNNVDLLSPFPQELVRKAPAGKFGDYVPHAHYVERLRDSGVKYTWQCEAVYGTYNGEKR
Ga0098074_10005773	F077364	AGGAG	MPFNLVGQQVTEAVNNSTVFLLPPGQITFEVDGEQVSLVSGQDYVNPGTKADGTNGTAYVYKKGSTKPKPKDDNDGRTIDEGTDIAKSLYSFLPPEVVNEYAKNWVKSGDANVAMGMTRQTKPWKDNFGKLMRDDGTLIMDELSFIGVKASYKQTLSEVGINDFSDFEDEFDDMATGYGTDDPVSAEEFQTRIDLVYAGVKDQIPEVEKLFRERYNISLDAPTIFGALINPKIQDKVLIGDIATLQLQAQATSRGFTTSFARFQELRNLGLTTEAAKGLYEGAGSFISQAKSIGRDLDISTLESATVGDTSSQQRIARIQAEIQSSGGLNIGAAKKGDEVIGLTEN*