Scaffold Ga0098074_1000300

Overview

Basic Information

• Taxon OID: 3300006790
• Scaffold ID: Ga0098074_1000300
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37422
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (41.94%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019751	Metagenome / Metatranscriptome	228	N
F027831	Metagenome	193	Y
F032237	Metagenome / Metatranscriptome	180	Y
F050004	Metagenome / Metatranscriptome	146	Y
F069958	Metagenome / Metatranscriptome	123	Y
F077161	Metagenome / Metatranscriptome	117	N
F083376	Metagenome / Metatranscriptome	113	N
F085538	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_100030011	F050004	N/A	MVLYLDMDQKTWAQGDFTDSATYDLSGTVYDENTFATARDISSFTGTFRLINQQGDTIFSTTQNLTLNADGTFLVKFATGATPAVQGTYKVRLRLEVSGSRLTCVGVNGSDEVYFEYD*
Ga0098074_100030016	F019751	N/A	VARTIYEILILVEDVINLVFLIHVCNAKWMKLIGDFMTRSRGPEKSKELHEYVSSQWMFFGRNAYQISDQINKDTELMSKFGKTSPAGIHYHVKQIQEEMENSINEDAMDTYIGEFIRARLGFENDVAALEEIMKNERDKGLDEMDKELYLKFARTRHEIKLDSFKMLQDSALPLQVKKLKMERAKLRPARPMPKVEDNGVSE*
Ga0098074_100030036	F032237	N/A	MGENNFIDKTTSLKTVERVKFKLCPFSKGSKVEITWAFNPEDPTHIDQFLEEDENKNEILMALNGFKKLAENNLGAKILTDE*
Ga0098074_100030040	F077161	GGAG	MRNLTVPEIQARFNNHQKLHRFEVDKLFEKVKHKPFTEMQYRYLEIGIRHQFIYDIETSDFSPDQNFIICYHGILRDIVTEKIEQVQDSITKKDIKKAVDEHSFDFDYRLLQTLSHNMKQAHHVIGHFSTKFDNPYFRSRCLITKQYDLIPDYGYQFYGDTWRMMKSTMKAKRNTLKNFITQTTGKDEKTFVDLKYWYITHFKDHKLWDKAMSYIIDHCVKDVNMTYQGLRKAELFNNIQRAKA*
Ga0098074_100030044	F027831	N/A	MAKKLSGIAYGQRNLQKGQNDTQILIGLKRFIKEEFGLDFKREWYVGFDKEYGNLCRISESVGRKELERFKWKNPDLLCVSDQFGVIIVELDGAVHDRKVRKTTERNVLFRNAGIKLIVLNIADIKEFGETIQDHLAQEMKKLLGQY*
Ga0098074_100030047	F069958	AGGA	MDYWEGKNQGDYYLCDRCNVAKLSEYEYEGNYNPDNDNRYCQECANWIILKHYKCESCGNSGSHRSERILPLTCQCGETLCLK*
Ga0098074_100030061	F085538	N/A	LTSENTQYQIAVAINYWDDPKGLIKILTNDKVYEFITKFYVIDGRYEGRNDEPQSHPDYLTDLEKIYSKIHIVSMDGAKQIDKRNMYWKLAGADKMDYVIVCDSDEYIDINPNVFVSSLRTIDDRPEKCYPIKQHMEGITTMSRPRLFKAPFTFRHRQNEKTISHGSLYDKDDTEIINQMYMWFKDHPKREINSDNQSGVEGIEMWHNKEFRSKERVIADRVYYDETPTR*
Ga0098074_10003009	F083376	AGG	MLKIYLNPEADKLIESLDLGRVSLGESVKYTVYMKNTDPEWSIHNIKIENANPELRFEAPETLKPNEVQEVHVYWTPKITNRKPLRAEFKFSGDIFIG*