Scaffold Ga0098054_1024169

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1024169
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2405
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043681	Metagenome / Metatranscriptome	156	Y
F044800	Metagenome / Metatranscriptome	154	Y
F101195	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_10241692	F101195	AGGAG	MAKKYKLKDKSIPRKPSFLKLGKNNWYKLNTGRSVELDKVSELAKDYLEEVKVKIKEVKDNGK*
Ga0098054_10241693	F043681	AGGA	MAISFNNITYDKIMIPLRDKLRTEFAGAMPIYFDNTHRQVGNKSLRIYPVAQTLQDKRTRSYINLYEIEMDYVLNTNRSNEKALDEMYKDVTRIETVLFNNSNGGDIPYFYAGMPTIDHNIDTDIPNALVSKISVPVLYEEVHERFVRFITSNDKFFVTSDGSFYIVRS*
Ga0098054_10241694	F044800	AGG	MATASTNAWKVNVEETIQTGIRNEFFSSLPVFRSRDFQHRGNQFAILKGNSSEPQNTMYAVTPDTYNLSFEFYMLDRKRNDTTVKRFFNQVSRIEETFYSLLDIDPLFNVIINAIDYSDDEEFNGYRKANFDMVVRNVR*