Scaffold Ga0098054_1023882

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1023882
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2422
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009459	Metagenome	317	Y
F022875	Metagenome	212	N
F027168	Metagenome / Metatranscriptome	195	N
F044460	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_10238821	F022875	N/A	PTTNKRKPMKLNLTDDIKENIRVRAKQHINSTDPCPDHWDSIETSDGFVDFNVWKDDDYRAGEWIVACYATYSTDDGYLCTDTSTFKRLAL*
Ga0098054_10238822	F009459	N/A	MSREITLEPSVMIEELMFYIHQEEMGGDCIDPSKRFFPLYLELQKLKDKIDNDKHDLYVSVKNDEVRS*
Ga0098054_10238825	F044460	GAG	MEETDEHEEVLEHLDESISALVTKGYDFFWSNNELCYDSDLKVVRSDRPRVRPRTWFCHMNEDERERLTK*
Ga0098054_10238826	F027168	GGA	VNAIEAEMKRWGRATYRQFQQIYKESERGSEMDSSKRVLSKLAPQLAQPIEDFFNRFASDDSPSMPIWLCYIADFHPQMVAQIALKTVLDKMYAETRHFSRLASEVGKAFEEIARQRVAEHTVPKNKMFSVQKPKSKRSKMQRFYTVEKNNRRFTCWETRLKVSLGAWLLGEIERHTGLIEFRMERFGKKQRKIVTLSAQFSDWVRRFDTWKEMLDPMRMALPTKPRDWVDFYSGGYESF