Scaffold Ga0098054_1021789

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1021789
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2547
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023845	Metagenome	208	Y
F041145	Metagenome	160	N
F059445	Metagenome	134	Y
F098210	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_10217892	F023845	AGAAG	MSLLTYCKSTHDEIEKLIKNHVDECKTVIPWDGQHRVVVKKIIDIFKRTH*
Ga0098054_10217893	F041145	GAGG	LSKPANIKHENLVKKLEMLVKLCEETEPTPKQLLKMSGEKSANVTVLFTPEMVDAQFYLQEVKEREYDSYSIVDIMRACNVMWRWRLKVKKEGWPDMSSIEYRCGELLKKSQKIQAIKDYRAYMEKMNNDCSLRQAKEWVDRLQVKLDLDK*
Ga0098054_10217894	F059445	AGGAG	MTLNELVDSLIELSCQEMPEEARKSLDDAIDHIVSNMNDDQLKDVLGKTIIDDIEARYPKHVWKEDGDEEEIQAIKSLIEGNIAIA*
Ga0098054_10217895	F098210	GAGG	LRLPKHIKVHRENWVRMMYCMKHLMKLHPEYNEMIMPFYSEMYDKYPYNEQDPFNFEDNYKVRPRTSIERELDKLADLNNKEKDNLEQEFTSGLNQLIWDLGMTLPSWDNKDKGNKDD*