Scaffold Ga0098054_1017183

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1017183
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2909
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001689	Metagenome / Metatranscriptome	651	Y
F007401	Metagenome	352	Y
F063608	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_10171831	F001689	N/A	KGKSMILKKDYEAVFKEGFRLGVRLTRAKSCLENARNAKLINDESMEKLQMEFYQDWSELARNAGRKFTPMTAHEPDQPAFDFGDIEMQLHLSTTPFKETG*
Ga0098054_10171834	F063608	GGAG	MKRKDPLRTRLLKDYAKVSKTALREPRNWKEVATRARWERLRKILWRRYDYLPQL*
Ga0098054_10171836	F007401	GGGGG	MIMSDQEILKQRELLDTLLATRTSQYERVKSMQAMDSIYFKKKLPKNVILFPLQRIKRYVHHPSRQPSKKNI*