Basic Information | |
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Taxon OID | 3300006789 Open in IMG/M |
Scaffold ID | Ga0098054_1011235 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3687 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (58.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 45 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010829 | Metagenome / Metatranscriptome | 298 | Y |
F051060 | Metagenome / Metatranscriptome | 144 | Y |
F065101 | Metagenome / Metatranscriptome | 128 | N |
Protein ID | Family | RBS | Sequence |
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Ga0098054_10112351 | F010829 | GAG | MGNLADHRRLRKEQGLYEEDPGTGKYTKQEANYIPFLGNNPSDEKPAIYTGRFNVTGGTIELEAKRSGGKLHLTCLADEKHNRAVFECVERFVKAIFDGTAREIKEAEPEDSQIMKLKAELSQVTKEKKEMKDTLETLRKALHG* |
Ga0098054_10112354 | F051060 | GGA | MVNDIEHGTLLGKCAVDGQPIFDGSGFRSKHCTVMNGKWISGDVLLKLYNRTFEAFLDHHNDAQEEKQMLLNKLEKYGWQTDPESGKLIKISDETKALNRAETMEKSD* |
Ga0098054_10112358 | F065101 | N/A | MNQIGTIKRIDQYERVYVPKQILEALGLEKETGHCVWVETEHGYMLKKANVEIEE* |
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