Scaffold Ga0098054_1009695

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1009695
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3998
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006773	Metagenome / Metatranscriptome	365	Y
F015360	Metagenome / Metatranscriptome	255	Y
F019253	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_10096952	F019253	AGG	MNPIEKFNNYMTQHTDKVPLLSVQSTDDNRFTVLRDFLSQCFDDVEDNAWSVSTNLGKFVDALSTMEPEDKNTLTRTVNKYEVKGTSSGVYGERTYGYDRSRIDRNLIRRRRAN*
Ga0098054_10096955	F015360	N/A	MTKAKMDYLWAPKDEGVVSGILDHLGFQPVGVSSRYPAGIKYDTLIAINEMLQSNDKASSMVASRTHELQGDRKVKSRKAPSVDSVVFALQSGKMNEADLKKAMKKAGLIK*
Ga0098054_10096956	F006773	N/A	MSQSIETKTNFPWKVGSKNVDYFVEVGTTPYGKYGLYKEMIPVSSGSRGRHSEIASEIKLSNPEIFSELELRQVVSRG*