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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006789 Open in IMG/M |
| Scaffold ID | Ga0098054_1009284 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4104 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 45 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F034394 | Metagenome | 175 | Y |
| F042629 | Metagenome | 158 | Y |
| F053638 | Metagenome | 141 | Y |
| F087902 | Metagenome | 110 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0098054_10092842 | F053638 | N/A | MALIPIKITYKDKEEIVEFEDSLNFGETEKLINDSVDLSDVTKPKIDLARYRMNLLVMTIKKAPFKTGDITTLNMMDGNIVRGMLREIVKIHPLTTYIEDWMETFISSEALKSSDMQSTTTVPASSGGTKKK* |
| Ga0098054_10092844 | F042629 | GGAG | MTIITYDAVDDIINLVRTKWSSLRPPHITKVWEKRTVGFIDDRSDEIIVSPKGENIEYFGLGGTAFWHEQIIELDIRTYQDIKRHDKVVKEIVKIIKENIVGDTYTDLRVIGSYSRNYQYRNMYSYIVTISYRKSDPV* |
| Ga0098054_10092846 | F034394 | N/A | MVTTTTYCSVGDISDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTKKITREVHDLPLLYTFGWGTPIFLQHRNIQVLDSSAGDKIEIWKGESDSWENIVGQDQWYHAEYERGTLHLRGYLFTILRKNRVRVTYRYGGENYAGDTTIPLDIADAVIKMTAIEVMNTSFRMDEIPTGGTVSPSESKRYWQDDIDLCISNRREVFVVP* |
| Ga0098054_10092847 | F087902 | N/A | MTYTNHNVKDISADGAVCAGHGVIVSVHVTKAGASGDKVVFHNGDANSDPAEFTVYGEAIQNIQDISRRFEDGIYAEVTGTGAKYLVVYK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |