NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098054_1008079

Scaffold Ga0098054_1008079


Overview

Basic Information
Taxon OID3300006789 Open in IMG/M
Scaffold IDGa0098054_1008079 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4439
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008049Metagenome340Y
F056145Metagenome138Y
F082795Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0098054_10080792F082795GAGGMTTQQYKTNKAGFVLWDGRIMSIHNFYIELCGSLMEGPNSLYCHTVGWANLHGYGEKWGSLDDKEIDNLLLSTNAKFINYPSRRA*
Ga0098054_10080795F008049AGGAMSEHHNNNWTDYLLCIGMELAYYKRGEHPINEQLIIEKIQSLGGKL*
Ga0098054_10080798F056145AGGAGGMRFEIEVSDEDWKLMLKNRYGHDNVITRSYMLDIVHDIIDQIHEVNK*

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