Scaffold Ga0098054_1008051

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1008051
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4449
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000479	Metagenome / Metatranscriptome	1092	Y
F010276	Metagenome	306	Y
F043885	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_10080513	F043885	AGGAG	MVVIKKRDYVSIPMTETLYWNRVGWLMNAMLTADDFEFRLIYFHKLQEMMRYVP*
Ga0098054_10080518	F000479	AGGA	MSKSVNILEVLEKAHLSKARMSKKAKLQIIDSYGRALMMKKVIDDFIKVNRNLIIDMGIGENANLLHGKDYQLHVSQKLSAKIDTKLLKEKLGELEYHKCKVPTQYQQIQAMPLEKNRVETDKTKYSIKEVADFDLAV*
Ga0098054_10080519	F010276	AGGAG	MPDNDNDLSNRLAVVEQTFGLRTRNNTDVAVPNEQPIQPQHTDNINWKALYKVLESEVEIIILDPNCPSYVKEWGNRVMDRLKQHLPT*