Scaffold Ga0098054_1006363

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1006363
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5106
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F035963	Metagenome	171	Y
F059346	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_10063631	F002078	AGGAG	MEAFMNQGWFQIAGEIVLMFTALTGALPDRFVNKIPVLGKLWPIFNWLAGNIFNNVNHPKGMAALQEVEDELDKAKAEVKDRTGLPD
Ga0098054_10063633	F035963	GGA	VDKINDIYLAITSGLLAVGLWIFKRLFKSIDLAHERIDRLESKNVDRAYLESQLVPIRTDLKIILKHLLETKND*
Ga0098054_10063634	F059346	GGAG	MEKILESAWALFVAIGWFFINRITAKVDALEKEKADNSAVGKHSNLIHETDRRIDELQYTTVPRQEYKTDIAALHTRANELERSKEDKVTDVRIVNKDDPNPSKKGK*