Scaffold Ga0098054_1003281

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1003281
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7411
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010167	Metagenome	307	Y
F013820	Metagenome / Metatranscriptome	268	Y
F015741	Metagenome / Metatranscriptome	252	Y
F022754	Metagenome / Metatranscriptome	213	Y
F036736	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_100328111	F015741	AGG	MFSTGCSGFPIVELIPPVFNFALGFYDHNDYYSKECLWYDEIKLNDDTKKWLLESNPPEIVSKDLSKVSRNNDIYREVCKKDKSMADKMKDKANRVLDKTLMATEEEDG*
Ga0098054_100328113	F022754	N/A	MNELIITIMLIIPSPHKLIDWSVNEIPTQIQIIHKSGLEVSYTATPVSCKFRPRHKREMVFKSPNNRCYSVYDLSSPRFIRHPNHWYKIELPQ*
Ga0098054_100328114	F013820	AGGAG	MSTMISTVIGFIDKAIPGQKTYALMIMGALMMGCQMLGYHTFSQEAWGLLGIGGAATWKMGADRGKPAAKK*
Ga0098054_100328115	F036736	GAGG	MDKLNEMLIGSLALLGGFITKRIFNNHDTLSDRVTALEKIVLTKEDLNSLERNMEMVVAHLITSKGEK*
Ga0098054_10032812	F010167	N/A	MIFAHTSLIQEGEAALFYRFSRPLNGYMIAAVLVSDNVEAKMNFAKVWTYFVSEIVQADDIYASIPLEGQNSMFNNYLDYHDTIDGLKIYKVDNFLKKQYSNYDKHLEQAGKKL*