Scaffold Ga0098054

Basic Information
Taxon OID	3300006789 Open in IMG/M
Scaffold ID	Ga0098054_1002445 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006789 Open in IMG/M

Scaffold ID

Ga0098054_1002445 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8761
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (37.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8761

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (37.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)	Depth (m)	45
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.51

Long. (^o)

-76.2

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F001625	Metagenome / Metatranscriptome	661	Y
F064801	Metagenome / Metatranscriptome	128	Y
F101853	Metagenome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_100244510	F001235	N/A	MPTELPVDTGGTDYGKKLWDKHQSNEYTKVNNYKEAVCLNCLKTDATSATIADICAECAGKRGREPLLATVSQKMYGLCFFCGYYKFNIEQINGRFCRSCHRRIANVTKEYNKKGGMFKADPFWIKMRKKLGKDWMKLMSDGSQNKR*
Ga0098054_100244512	F064801	AGTAG	MGFGDTFKTIFKNLTQINKSYTSTTVRPSIAQPYMSTDTGAKLPIFPFPLIMIYELADNVDSLRIPIETLNREIFKNGFEIVEKWKYKCSNCAKEFQYKPLKGNTPDDQPRETNDSLTPTIGSDATNKATIVEAGMECDNCGSPKLLRPSPENRLAVEDLLNVPLNGNEQTLEDISRQLERDLEIADNAYLLVLKNYYINDTTKEIDPKKTEIKELLRIDPPQVAMIADSDGRIGFDDKHNPVYVCPRFEHRDKRLTQGVCDRCETKALKAVAEVNSVYSVGIPQPKRVVYGEGEIIWKAGKYKPGLIYGFSPIYAIWSKVMALSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDALEQKATEDPYMIHPLLVESDKGGKNMAQWIDFTGSLKELEFTAIRKELRMIIGAIYGVLPLYFGELPTGWSQEGLQVTITNRAVKWGQDILLQSFLSKIVAMIGVDDWELKLKTGEETDKLRDLQIQGVEIENMKALQTLGFEITRTHTGEFKVSKDPVIGIREMMEGQGQNTMKPGQRGRETAAPKEDQQRFEGEPKHVRPSREGGLMQGSPQKKPFAQTKAVMDLEKDKFPDGITPANFEIIKSTLQDSVDYSWTKKKTTEELRKYAGLTVRQAREIVKNELAETRRWEDGIQEEEEDKN*
Ga0098054_10024452	F001625	N/A	MAVTISTSDWTNANVRKTLSWQAALTSKLRVYKVKVTAGGSDAYATNGVAADLKEQRISTLVAVIPEFTDSTYKVEYDKTNEKIKLYTVGGSAGAVFVELANTTTIANKIFEFLVIGY*
Ga0098054_10024456	F101853	GAG	MDITIKKGIAKVTGNFGVSFFSPLVGGNVAESIYNVGLTFEMSILIAAISACFVTGLSISKEAAEWGKQNGKSKRN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098054_1002445

Overview

Ecosystem & Geography

Associated Families

Sequences