Scaffold Ga0098054_1000781

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1000781
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17759
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F041493	Metagenome / Metatranscriptome	160	Y
F042628	Metagenome	158	Y
F086164	Metagenome / Metatranscriptome	111	N
F104992	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_100078110	F041493	AGGAG	MTTQQQDYFTKMIDSNEDHLYTTIYDATSGDPFRVKSDRVGHYLSKIKRESKLEGKELVFSGEYIPAFVKTKQEIIGSPSSSKTERVAPISQVKAGKRRRGRRGRKK*
Ga0098054_100078111	F028039	AGGAG	MTTELTERWETIVKELKFENRWNVILEKHLEDNKLTDLPEPEWSDDPTMAYIYLPAKSLNGEVVRMDKTKARMFPESIVGYLEKGGLMKLPAKVEAPQRSQSKEQLPKMETEKPNKPEKIKLPKIGE*
Ga0098054_100078112	F104992	N/A	MTVGTRQYESVNSTTTTMSGNADLTITAASDKLQVVDPGGSARNLDLVFVDSSETGVTTGFAEVYIQNEADADEGITVRDGNNSDNAIGVLDQNAGGWFRFVGGQWVSSTSGLN*
Ga0098054_100078114	F086164	AGGAG	MAFGHEKLAVDATVRSLTVPNDVNFAQVKVETAAIRYRLDGTDPATAVGVLVSAGDAFTIYGSDTLNNIKMVEATSTDAVINVSYGTANTGIHGVIINTAA*
Ga0098054_100078115	F042628	AGCAG	MGKYTKANVNNIFKEEPEISVSEHTVTKKGKKMKMVIPEGKIGYGDVESHAQMAGDLATKHSDDTKAGQKAYEEVRKHRSEDTGSTVEENELKMAYAKMQGRMPVIQSFNIQDPATGQVIAQEFLFMKTDKNGLSRPLKIRVDVQTGKTTEVPL*