Scaffold Ga0098054_1000647

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1000647
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20278
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (94.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025173	Metagenome / Metatranscriptome	203	Y
F034392	Metagenome / Metatranscriptome	175	Y
F043141	Metagenome	157	N
F049946	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_100064727	F049946	AGGAG	MNPIIKTIARDILVLSAQAVAFRLAAPQDQQQDVIFAAVPTKGSPPVKALPGESEPKAQRFGF*
Ga0098054_100064734	F034392	GAG	MSRIDKIKEGDLLVNRTTKKPYIVLEVKRYQRKVYGSGPSGSKRKRFLLLSHEGRQTWKMDTELKVNYYLPGSPYYDDIR*
Ga0098054_100064744	F025173	GGAG	MANGYSLFSKLHPVGGLYRYKAPFGYVAGLTPGWRWHNPWSDGKVYLLTKWERPEGIDKKSPIINAFFLVNGTERCVDVSFFKHLEQVE*
Ga0098054_100064748	F043141	AGGAG	MPTMIDCVVCEDPFDLLSPEKKRAGGKRNHCADCAEETTVPYLAVKSANGKMSDLTILAFDSKQDRDRYQRAWKNNTGHNKGKSCHLSGSNTVMSGLKFRKVGENRANANHKGKS*