Scaffold Ga0098054_1000386

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1000386
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30143
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (39.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006492	Metagenome / Metatranscriptome	372	Y
F007652	Metagenome / Metatranscriptome	347	Y
F031053	Metagenome	183	Y
F047026	Metagenome	150	Y
F072852	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_100038617	F031053	N/A	MKQNKNHENYGLYITQNTYTMKFYCFSREVADNYWNGEPCKKASGATSQEALSNYKNGNYCNK*
Ga0098054_100038642	F006492	AGGA	MEILLEALTSFGLSGVILGILLYYLNKLTDIHRDERKEWNDANNDHVDKFADVISNNTRALTEMKGELKENRCKMK*
Ga0098054_100038643	F007652	AGCAG	MNEIKYPSVRTYYICFDNERTEVKSYGWVDPNQVFNTIWIFDEFTDEAQWIAELAEWGIIPDIDEQGNLVL*
Ga0098054_100038645	F072852	N/A	MTYDQRISGSKGSKLLTGTGAHGSLGAYCLIAQEDTTFSAFAVGGVGSLAAYGLDSAAVLKAGSLITVPEQSSITSITLASGSVVIYNG*
Ga0098054_10003866	F047026	AGG	MAIFLTQNGEPSEYGLAFNDNAYVIKTTNYTPTVRFKIMVLPETFPTDPAIATVRVYPTRAEDGGTVYFDRAFFDPSRFLQSNIKGEVDIKGAAHAGFFKTNKIHQEYYLLIQEEEKNSNDIYYVTNNWLFSKMKSVWNGVRDMDTWLDFNYDDYIINNSSSTTKRFLTDSPRTISIDSAQSYHLYFIANERFGAYQYNIKVYDGYDGSGSLIADATVSNGIATADSWSEIYQRIAIGTQDIINTDPSIWTDSLLGSTPSTALNGALSYTIHLEDNTNAQTSERFTFNINPPCSKYDGVRVHFLNRLGGYDAFNAYLKSINVTDIKKDKYDQQHHDWNGWTYDYSKKSKGSTDYNVGLRKRVTINTDYLTDSESVWMEDLASSPSLYIEENNELIAVNIDPKRIVRQTSLNEKLCQYTFELIYSLKNKRQRG*