Scaffold Ga0098071_106660

Overview

Basic Information

• Taxon OID: 3300006768
• Scaffold ID: Ga0098071_106660
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 29_WHOI_OMZ
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1122
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004770	Metagenome	424	Y
F009538	Metagenome	316	Y
F011036	Metagenome	296	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098071_1066602	F004770	GGA	MISRLFYEWRKKDEPDLSAEFVIRTALKAAGYTVGHIATQGVWDEDKPKFAHGKWDASRLPHEEIAK*
Ga0098071_1066603	F011036	N/A	MKKFKIEVSHASPGQLQTIAAELKIMSNGWTKFGPRIMINGQKLQAPSLRIPGSAKSFKQQRT*
Ga0098071_1066605	F009538	N/A	NQTPGFSDNQDGWQDVRNGLNFFRQYFAKEYMVLLD*