Scaffold Ga0098071_105551

Overview

Basic Information

• Taxon OID: 3300006768
• Scaffold ID: Ga0098071_105551
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 29_WHOI_OMZ
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1252
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024807	Metagenome	204	N
F029468	Metagenome / Metatranscriptome	188	Y
F058443	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098071_1055512	F024807	GAGG	MTKRSIPFNLVYHDKDQQLTLALHDNPVTLTRDEVDALIFHLDSFLFDMDKARKPQPSAEGADTHAEAHGEMLMAQFDDDPNPYHGDYSED*
Ga0098071_1055513	F029468	GGAG	MTMKVRLKQQAEKEFDKDDVDDKQLALNVACKNFVSEFIDCEGEVFYSTYSKAANSIWQYEQSVKNAAMPKVGPEWDHKAGVVGMWRYPHLRKDDD*
Ga0098071_1055514	F058443	N/A	VLCVTTLGMLGGKSVRTRGQTVTLKNKKSGHEVRLLVILSDSRQGYLASDSLSKAKEGNWAWYNLNEWSEI*