Scaffold Ga0098044_1113347

Overview

Basic Information

• Taxon OID: 3300006754
• Scaffold ID: Ga0098044_1113347
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1105
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004103	Metagenome	453	Y
F006529	Metagenome	371	Y
F097132	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098044_11133471	F097132	N/A	EHKADANRYEDQLKETNKQLKDYNKPELTATQMDDVYEAVEKAVNSYDFSDTDNYEIDYGIDYDGRINCESHEFINESDLVQMIVDKVCNLFKEVEELDTTEPDNHA*
Ga0098044_11133472	F004103	N/A	MRLIDQVKPEVLDALKESKIEYNSSYKAIVLSLSDVERYRELTINQVDNLITFLPKELHPNGRTDFYYGDYLLQKEYQS*
Ga0098044_11133474	F006529	N/A	MTDNKRVTNKQILDKINDLKVGEEGLNLLAIKIVSRMTKLRAMEDWFHHVS