Scaffold Ga0098044_1094439

Overview

Basic Information

• Taxon OID: 3300006754
• Scaffold ID: Ga0098044_1094439
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1230
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027483	Metagenome / Metatranscriptome	194	N
F050302	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098044_10944391	F050302	GAGG	MNVDSRVITLALFLIAQSVGAIWWASGLSSEVERLSGLVDKSDQFQTEIQRAVSGLDVLNFKVEELWKAIERLEEADNV
Ga0098044_10944393	F027483	N/A	VPVFLGKESGGVIKAFTLLNIAPMADIQRTLKPKALIAEMVSPLIKAPLEQLANYDSFRKKPIKAFPGETKDYFGVALSPRLWHLAQIIVPLSEINRLNPAGVFGERLRDPTTGMISSTEAYGGIGAMREAAIDAPEIARWIRFFSGGTTYDVDLHKHRYIANKNLKKDAAELIGKMKWAFANSQNERAGAILEVLEALKRQEITDPFDRR*