Scaffold Ga0098044_1025778

Overview

Basic Information

• Taxon OID: 3300006754
• Scaffold ID: Ga0098044_1025778
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2608
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028038	Metagenome / Metatranscriptome	193	Y
F029926	Metagenome / Metatranscriptome	187	Y
F054053	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098044_10257781	F054053	N/A	SKGNPMVEFLLGLCIGIIVSISGAMMWGHQLSIKEDELNQQLIKEFQERYMETQEEKNYKRYES*
Ga0098044_10257783	F028038	AGGA	LANLDFYNKEIANIQQQLLDKLDNLVAGLGQVTDTELMQIAKQIDFFDEMERLGYGRLLQRVSDAYDNQIALVFSELNRRELGAVSVASIDTLRELKNFEMTYLTGQAKQYADQLKTAMLRGIITGETNAQIMAGLQTGFGVGTFISSSETSFLINDAFSRFSNTSRAKAFKEFPEIKFQYVGVSDGKTREVCQRALQEPPLTIEEINSLGYVDFGSRGGYNCRHDWIRV*
Ga0098044_10257784	F029926	GGA	MRIDQVVKPNSKVMSKLAQDAIDKITLDASKGQFQNGKSGYGYKNDTYKKYKANSMQGRNGKLKAFKGQSTDTTTSFVNMRLTGRTLRGMRASGKTDTAIITYDRGEIVLGNQKRGYDIYDLSNKNKEFIAERFG