Scaffold Ga0098044_1000504

Overview

Basic Information

• Taxon OID: 3300006754
• Scaffold ID: Ga0098044_1000504
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20840
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (73.68%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015360	Metagenome / Metatranscriptome	255	Y
F019253	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098044_10005042	F015360	N/A	MDYLWAPKDEKLVSSLLDSLGFTGVGESSRYPAGVKYDALVAICDVISSNEKTASMVASRTHELQAQRRVKSVRAPSVDSVVSALASGKMSEADLKKAMKKAGLLK*
Ga0098044_10005046	F019253	N/A	MTQHTDKVPLLSVQSTDDKRYHVLRDFLNSVFDDVEDNAWSVSSNLGKFVDALSTMESKDIDTLTRTVKKYEVKGTSSGVYGERTYGYDRSRIDRTLIRRKRAN*