Scaffold Ga0098044_1000231

Overview

Basic Information

• Taxon OID: 3300006754
• Scaffold ID: Ga0098044_1000231
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29468
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (19.44%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007550	Metagenome / Metatranscriptome	349	Y
F013467	Metagenome	271	Y
F015147	Metagenome / Metatranscriptome	257	Y
F021787	Metagenome	217	N
F025853	Metagenome / Metatranscriptome	200	Y
F089035	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098044_100023113	F013467	GGAGG	MTFGDLRNWVWCEDCLEWKDADEVSFAGIEEDSYGKDVLTFNCDKCGNENKNNIVSSPTKPRG*
Ga0098044_100023142	F025853	N/A	MKKFLVNYIPAVHEGQENKEDKSYSYRVEMDEQFANRSEKDESAGMAAKDSESGLWKRFRWDRIQSAVAI*
Ga0098044_100023146	F021787	N/A	LTTPVFCVMLFPVMRDMISCEEVFEADPQARAEFDVVCDEWLNEAIDAQDAEEDLVECEGCGEQWYAHQAGANGRIEWCRKCYKNDPYYV*
Ga0098044_100023149	F015147	N/A	MIEKIKWLVSDLGLNEFNAWLWIVGGAALTAAVLVLLSGGFDEVFRYWRVFFLNL*
Ga0098044_100023155	F007550	N/A	MIMKKIILFLFLFSVSLNAASLKIVPVQQKTLPNGNAYGLESGIYFELTDLHPFIMYKLQYSEDLKTWKDLVWLGTHKIAMTSPYFTWNQLPPNQCFFRIEEAW*
Ga0098044_100023160	F089035	N/A	MTSKMIRKPKPDALKRLEAAQAQARKQKRMIKEALETIRLNKPYKRSEDAPTLKEWNDSWIG*