Scaffold Ga0098039_1300968

Overview

Basic Information

• Taxon OID: 3300006753
• Scaffold ID: Ga0098039_1300968
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 536
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteriia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008820	Metagenome / Metatranscriptome	327	Y
F072422	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098039_13009681	F008820	AGGAGG	MANLTPYLTEKYTKMIAEITADLGKTADDLANAQNIIRALKNPDMMVNGVSLTLDMVQVMENGDIRLLPPPPAPITETCVQAPEPEKNGKKDSKELVNAS*
Ga0098039_13009682	F072422	AGGA	MQASQQVYEDAQYQNPAPIGEQPPIPAGVHNIELSWDRKRGYMRIIIDGKTWHFKEFLGRAQILGTDS