Scaffold Ga0098039_1048093

Overview

Basic Information

• Taxon OID: 3300006753
• Scaffold ID: Ga0098039_1048093
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1495
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004908	Metagenome / Metatranscriptome	419	Y
F064626	Metagenome / Metatranscriptome	128	N
F099123	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098039_10480931	F099123	N/A	MEMMDKYEINVWKDAELLSKEVVGFASSEECHAYVVEKYEAPGTWTGSHQNKAGVTLNRP
Ga0098039_10480933	F004908	AGG	MERQEHQLISTKKIVDLHQVDEGTINPKTGLTEKPSWYVRFEDMSDRVVFKSKMLELLSMGFRKTVENFKAGKATTLQGGEARFWVVVFQDYEVRLQTKDQIMEIVTEGHRHREDDDNAKFERNGHKEEHYTLE*
Ga0098039_10480934	F064626	N/A	MKELRKVTEKIKKVLIKAERGNEEFPWIVDQLSLIKMYDTGLPIHMVLGLIDEFIEDVEERKRIKALEGFDEEHVRKVYDKVNIKWNDRNIN*