Scaffold Ga0098039_1046029

Overview

Basic Information

• Taxon OID: 3300006753
• Scaffold ID: Ga0098039_1046029
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1533
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040676	Metagenome	161	Y
F087294	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098039_10460291	F040676	N/A	MSKEIVEQLQEDIKEAYVYFKSEEHFDEVFNQAGWDEDNMRIFDCGYIKGMQNALSKLQEIYQADD*
Ga0098039_10460294	F087294	N/A	MSKEVLLNKKSALELILNENIEQATDYKAQISVIDQELEDLGKPLATPEFLDKINETITEAVENIDLEDGMSCDFEIDYDNKIAISEARFDDTNAVADKIYCEVEKLFAEVSSDILEAQKADEACN*