Scaffold Ga0098039_1029604

Overview

Basic Information

• Taxon OID: 3300006753
• Scaffold ID: Ga0098039_1029604
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1946
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047901	Metagenome / Metatranscriptome	149	Y
F076479	Metagenome	118	Y
F105323	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098039_10296043	F105323	N/A	MKLKSKSSLFHNIMKKVDEQLASIPLNDPQGSPLEDSIEFDMHVDSIKVMKVTTAKGETIHPFSTAVATQLVYDELADRREAEQK*
Ga0098039_10296045	F076479	AGTAGG	MSFTAFILFGHICLAVPEDFDKCWNIYHTPQIRYSSERLCMKAANDYLHGAQEYYKRQKLSISQLELYCIGINPIDQI*
Ga0098039_10296046	F047901	N/A	MIQLLKRFIRTFYNYLKEGASIDITSQDALLLPMKYYRIRAIVEGRLYIETIKEKDIDTAFKILIKKAADGLLKVKEDVGFYQRKKVQITYEEVKNGTSGIGANETGSRTQVGKEGSDIAT*