Scaffold Ga0098039_1014117

Overview

Basic Information

• Taxon OID: 3300006753
• Scaffold ID: Ga0098039_1014117
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2906
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015878	Metagenome	251	Y
F023618	Metagenome	209	Y
F039678	Metagenome	163	Y
F082811	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098039_101411710	F082811	N/A	MTKGRPKGAKVWTDDKLAHVKYLTKCNSMSEIGKVFGTTKNAILGALYRDKVKNGYVPPPDSKYTGKKENYPKHLTFK*
Ga0098039_10141172	F015878	N/A	MTKFEIPDYYDQSKPKPKEEVLIERKCNICGKKAKMGKFERYCSFTCKHKATTLDYTSHGIRFR*
Ga0098039_10141174	F039678	AGGA	MNEKLFWKRATNLWKIMNSITDDLVYRAMWEEKLKELMKKGFK*
Ga0098039_10141178	F023618	AGGA	MTEEVYYHSKSKNEDMPVSEMSDLYVRRAFKKMILKEKKRFDEKEKLKTYIRNAINNLERALEEK*