Scaffold Ga0098039_1011959

Overview

Basic Information

• Taxon OID: 3300006753
• Scaffold ID: Ga0098039_1011959
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3167
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005551	Metagenome	397	Y
F010737	Metagenome	300	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098039_10119595	F010737	N/A	MVTTITRTFDGTPSDKTYSSLTDNMSSSSLGNIQSPQGSSRISRIDVAVDAPDTKGFVLACRLLGSNMSEQNFTLAGSCGDVADAGGTPQFNMIPTNFSVAGVNNIDLQVAFQFTTGTPTASGLSVTLYFE*
Ga0098039_10119597	F005551	GAG	MTLGPSESVSRAKDGKIYGWSGSKSQTSSGVTLLNYTNPAAFYLTRVTLGIDWSGISDGEVLSYVILVDGQALFTEKFVVLVNNIGIQPKMFEFMIPPNSTVQIKVFQDSNNGAASCILTGYRV*