Scaffold Ga0098039_1001167

Overview

Basic Information

• Taxon OID: 3300006753
• Scaffold ID: Ga0098039_1001167
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10487
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035492	Metagenome	172	N
F048573	Metagenome	148	Y
F071659	Metagenome	122	Y
F077816	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098039_100116711	F035492	AGGAG	MANVGTILESKSSEDSWYDPKQDFSGPMPEGDYKAHVKSLSIKRNVVVKGKFLSDIYEVIFTVADENKDMEYQNDKGESLSGATFVGRDFRSKGFFRFKKPNKSKYPNLSENMGSNRSYMELVNSFGLNMEEVDGKFYLPELDASDIEGLPVIAKLYHDTWTDSDGEERITPRASMIFTWEEGEKKEEELPF*
Ga0098039_100116715	F077816	AGGAG	MTNKKKKAVFVGIADRIQIKSKGYVMKMLYKRAKKNPFMADKTYEEYLEYIRSQVRLLEGIEIKADTEDEMYNALKSLGWLKEISVLAVYIITANYGIA*
Ga0098039_10011673	F048573	GGAG	MPRMRQCPTCGSKLKKENYQKRIQRKRLSRDKITLSLIDNSFESISKYFPMDDLDRFSFLKNVEEITDIVIRKMIRQYLQERLYERGCGLKYLIGMIKTENSAYGLKKEYERKSLDRIPPKID*
Ga0098039_10011679	F071659	GAG	MKIEEWIKIEEYMTELMGWDRGIDAMCEEHRSVAPKKPIYDLTKREDKKLIFRLRKRYSKYKEDDN*