Scaffold Ga0098048_1065409

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1065409
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1126
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005726	Metagenome	392	N
F012530	Metagenome	280	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_10654091	F012530	N/A	MSTKPETLFYKQIFRELKQVFWTRIENRHGGGIPDLYGVYSGFSFWLECKTIIKQNKINISPLQISWNYKNF
Ga0098048_10654094	F005726	N/A	SNITNIKRCFGVFHDTIETNGKTYKLQNTGNHARKDTYWKAFNCVTYNEDHLRGGIDQISSRLKNNFFTNGKGNIKTNAMNTALQLAV*