Basic Information | |
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Taxon OID | 3300006752 Open in IMG/M |
Scaffold ID | Ga0098048_1054165 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1254 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.509 | Long. (o) | -76.198 | Alt. (m) | Depth (m) | 48 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002928 | Metagenome | 520 | Y |
F005373 | Metagenome | 403 | N |
F014263 | Metagenome | 264 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0098048_10541651 | F014263 | AGGAG | MRENKMSDDRYITRDMLTEESYEGNNFAEGNAVKYNLQNGQINVICFCSDESVAKGVAEGLNLLDNLEADGIDLKK* |
Ga0098048_10541652 | F005373 | AGGAG | MNEGLENIKQIEDLENKVKTLSDHLAGMCCQADEDTPSEYRTEHFRSTMDDAYEYLEKIGYFNKEKTA* |
Ga0098048_10541653 | F002928 | GAGG | MKNILVRFECQIGEYQHIDYMLFNKKKSEWGYCKEFWGITKKDELKENCFWDDWMQNAVSVYSETEITDKQTKTLKELGVIY* |
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