Scaffold Ga0098048_1033364

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1033364
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1669
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015347	Metagenome / Metatranscriptome	255	Y
F020384	Metagenome / Metatranscriptome	224	N
F024807	Metagenome	204	N
F058443	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_10333642	F015347	AGGA	MLLESASTECKSMHYDMKEDAILPDMDTIYSAAEEMRRFADRLNNFADELMIVYRKMDHHQAMIDLDDLRNESYAH*
Ga0098048_10333643	F020384	N/A	MHHNKFHSYQKSLQKLRNIVSETLRSSGQGRQIEFDNQMRRAVRHIQIIKRNAPPDANGDLAMVEAYKLYDRLQRLSEYPTFFVDNTRKNPGRVASDRGRPSSVRWDVAAMMAAPKGGPDRNWWRPPPRPAPVKHYTREELENEYPAFTVSKERKDAT*
Ga0098048_10333644	F024807	GAG	MTKRSLPFDLVYHDKDQQLTLALHDNPVTLTRDEVDTLIFHLDSFLIDMDKARKPQPSAEGADTHAEAHGEMLMAQFDDDPNPYHGDYSED*
Ga0098048_10333646	F058443	N/A	MVSRGKTVRLKNKESGHEVRLLVILADSKQGYLASDSLSKAKEGNWAWYNLNEWSEI*