Scaffold Ga0098048_1024089

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1024089
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2018
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008887	Metagenome / Metatranscriptome	326	Y
F019114	Metagenome	231	Y
F059873	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_10240891	F008887	AGGAGG	MSKGCCNECGYKADYIIDNNNYADNGYKDLNQVPTDKMLCGVCYEDQDK*
Ga0098048_10240893	F059873	AGGGGG	MSLDYLTVTIKATTDDDFPDNVKQITHADIRFYVPCNKTKEKKFEKAKDNLLKAVRDVYSLEDQHRVDVTIQYEYFGVNE*
Ga0098048_10240896	F019114	AGGA	MKQLEARMIEARDEFHRNRRKRGFMSFWWSDPLHYVLVLEVAIANASSKSINFEAIVKLLPGSMGSRSTIATVLDDFVAREYMCKEKGKDKRKRVYRICKEPMLLVNQYYTNRDFSLKAVS*