Scaffold Ga0098048

Basic Information
Taxon OID	3300006752 Open in IMG/M
Scaffold ID	Ga0098048_1013488 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006752 Open in IMG/M

Scaffold ID

Ga0098048_1013488 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2834
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (100.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

2834

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (100.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.198	Alt. (m)	Depth (m)	48
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.509

Long. (^o)

-76.198

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F008883	Metagenome / Metatranscriptome	326	Y
F023856	Metagenome / Metatranscriptome	208	Y
F024320	Metagenome / Metatranscriptome	206	Y
F026889	Metagenome / Metatranscriptome	196	N
F073499	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_10134881	F073499	AGGAG	MMTDQQIEQWMRDNPWKANVIYPAGGIGFMMFIMYTCVQIIDSF
Ga0098048_101348811	F008883	GAGG	MNIGRYTIWYNHENHVWDIYDGRKGFKYPEYTINNYSRLLCGLRDKLGFLDTDKNHRRFWRVLRWWSKLRHGRR*
Ga0098048_101348812	F026889	AGGAGG	MNNVIEEYLALVERTVHTNDIFAYQELEQLEEQYPELADLVYQSAGPLAYDIQNNEVIS*
Ga0098048_10134882	F001655	GGAGG	VKQPENSHTKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFWYCKDELGLYENFEASVRRTAKALAESYTYWPDGYVHVQTIINQEYVNIL*
Ga0098048_10134883	F002858	AGGAG	MLIDEKSIYEVTGGDYSVYCSGYTQARTVTNDIMKQDPWGGIPFVLRLDLDLSFDDKGNVVMSRQTLDKILFLASDELPQAEGDE*
Ga0098048_10134885	F023856	AGGAG	MRCRACNRILEESELTKKDAHGDFLDLCGICLSAAASAGVDTETMEYYQYEVFTDDENYDTLY*
Ga0098048_10134886	F024320	AGGGGG	MTFEEYEQGYYEGDSEDPSGPPEDPETHAMVEHLVEFDTEMYRLESRRKYKGLSYKHLEMLMVELHGKEWKDAL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098048_1013488

Overview

Ecosystem & Geography

Associated Families

Sequences