Scaffold Ga0098048_1011992

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1011992
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3033
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F007417	Metagenome	351	Y
F008281	Metagenome	336	Y
F008595	Metagenome / Metatranscriptome	331	Y
F034894	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_10119921	F008595	AGGAG	MSKEENKMENQEPVIITFNGTEYRAADLNEDQMALAAKLNIAGKKLARLQEYYDDYVITDEYKNLCIQSFDRAINATNEEAEVEDQEEK*
Ga0098048_101199210	F034894	AGGA	MNVTFNLLGGGELNIPPRAISGFYKDQFTSEVIVEVGEDEYKVRDSLDEVKYILGLAR*
Ga0098048_10119925	F001942	N/A	VPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLMVEFGSAKYTVQVKSRRATKEKKFVFAAENSRSQSETYKHYTCDILAFVFFDGEDKRIMFKANTSSQNYFTFDKKVITESMELDSLKETLDNLSSVPVLNPLI*
Ga0098048_10119927	F007417	AGGAG	MTRYTLQVQLPSLGWVVAIKTSDLFYMASKRARLIAQGHKVKLTKEKK*
Ga0098048_10119928	F008281	AGGAG	MNLMCNTKHGAIEWRWKDTGQPSPEYKSLNHQWWIPKKSEFELVTKVDASIKQELKDEIWEDMQSDFEYQKSIYKLHKLNKKEKK*