Scaffold Ga0098048_1008023

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1008023
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3878
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017047	Metagenome / Metatranscriptome	243	Y
F031661	Metagenome	182	Y
F035971	Metagenome / Metatranscriptome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100802311	F031661	GAG	MQNSTPKKSFSVQLAEANNTVQAKGLVLSQWDKSICKADKSRFKALCAKDGFWFSLGEICLELLKQSGGSRTDSALLKDANLHTVAKQRRNEAMKFVTNFKVIEDNKLIASHASMTNLLKAVDKIINPKVEKEPKVPVEPKAPVLAIEDKSSEAVTQSTKTAEDLALEVLLQVEMNNISIADFKVAIANAIGMIEENNEVVPFEMVG*
Ga0098048_10080232	F035971	AGGAG	MGNLTWNEVAQIETDKRYMDMYGLSQLDMEDMLHEDMPCMLAMSILSDAQHVMSYDQEQARQFINRAKYVIRHIKSDSGLMTTPTTNTNTQTN*
Ga0098048_10080237	F017047	AGGAG	LATIYKDELVQTLWDLFKEVHGVRPRGMGYEKYSVTDLEHEVAHLQRSLEEEIRHEREMEDRAINACMDCGASDIGTAMRWLEDAYEMEWV*