Scaffold Ga0098048_1005656

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1005656
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4771
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003920	Metagenome / Metatranscriptome	462	Y
F004488	Metagenome / Metatranscriptome	436	Y
F004715	Metagenome / Metatranscriptome	427	Y
F021539	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100565613	F004715	AGGA	MIYTDQEHEWLSKPKKKKRVSNQTADGSAPQEEDDRLWQRCWGIQTTIEVDGKTYIVPIQL*
Ga0098048_100565615	F003920	N/A	MLVRTVILYVAMTVCAVAFHENTFAVWELREDLQIRIMNLWELLQQLEYVTSDQRVIVYEEIDHIRSEIQRIIDELVAHDHSQHQRN*
Ga0098048_10056562	F021539	N/A	MNKKLEWYIIIFLVIVLVGLSACSPNPHPDKQPQHETEQEMNAEITKDMDAMDREQELLNSDGPTNFEGIAHALACMFAPDECPAKKSKEEKKMDR*
Ga0098048_10056565	F004488	GGGGG	MFARLRGWFETWKQNLFDAYDPPKPTVYKIGKNKYVKTKRLRTTSKAKGPYLK*