NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098048_1005289

Scaffold Ga0098048_1005289


Overview

Basic Information
Taxon OID3300006752 Open in IMG/M
Scaffold IDGa0098048_1005289 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4963
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F021402Metagenome219N
F023243Metagenome211N
F050679Metagenome / Metatranscriptome145N
F090862Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0098048_100528910F023243AGGAMNPEIELDLYEITTAAQTGLLRVTESIKLNQNWGHDYKGTLEDKISKSISGAMAEQSLCKYLDIPYEFHTNVGSVPDVKYKEYNIQVRSQTPKRNNKNSLIIRPKGVKPNEIYVFILSEAPKFIIKGFINSSAVIGKENYLTDFNLARPKVWSVPLEILNPIMLLKDEGLN*
Ga0098048_10052893F050679N/AMANKTKKNPKVIAEIMEELATGASIRSCLSPRNKKEDRPCWQSFRTWMAKDSNLRKEYEQAKTDGIEYLLSDATDTINEALENSKFKEKTDLGQTHLIKSFIDLTKWKSERLAPKTYMKKDSLQLMGSDSSPLVVKWDK*
Ga0098048_10052895F021402GGAGGMITTNLTIDELDRFLQISSFCDSKMPKVKAKTLPTMFKVIDNSIGIGEDKESIKNSDKHLARLRITLTSRQLSIYDFILILMLDVAAKDRELLYLRNFPQRKSLRQMKRMYLDWSHTKIGYEYNRSLINVCRIANKNLKKYLTS*
Ga0098048_10052896F090862AGGALTKYVDPKLIAKALARVTKSTNIHYTSAVEKIKKNRKQYYQNKETKTLQKSLSKDRFNTYLEELYKHDND*
Ga0098048_10052897F001839GGAMKTFEKFYSELLNNQVLTANEKVIYVICKSFATAPRGCRISHQYLMARTGIKTRKSLIKALDRLTLFGMLARKQIDNSTCHYVFDKETMQQYIQHNQNKRRKISLSKKKSNPQINQQNDNVIHMVKKES*
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