Scaffold Ga0098048_1004720

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1004720
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5313
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004880	Metagenome / Metatranscriptome	420	Y
F017420	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_10047204	F017420	GAGG	MNESKIKKVSVKFPNFVSKDSIEYEGKRIVLKLPQIQDINNRMYSELFSGDSGMTAGAKHLPRIEGFNCTWRNDEKNPQYTIAQFTFASGEERKVMKIVEKFGGQVIESRADLNQWQFDETNLSGKTYQVENVNETIGGLR*
Ga0098048_10047207	F004880	N/A	LSQEYYDHLNNGETYTCDKCQTATLGAHEYDQYIKFQYHYCEPCWNYMKLKKGTCDKCGSYMTNRSETPTILIKCGCGNEVELK*