Scaffold Ga0098048_1003933

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1003933
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5952
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018178	Metagenome / Metatranscriptome	236	Y
F070064	Metagenome / Metatranscriptome	123	Y
F082548	Metagenome	113	Y
F088835	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100393311	F018178	GGAG	MDRLDQILTRLSERINEWEGASREAIEAETNFKSFEAATQKAFMDGGASAAKAQTETRSTGEWANHYRAVQQASLMAEKLKKQIMLGQLMFDAERTKQANQRRIV*
Ga0098048_100393315	F070064	GGAGG	MGRVKSDMFEEYLGPDDELVAKPISQVVDNIRDCDLPTNSVERYEFMQTQLKDLMNGIKTNS*
Ga0098048_10039337	F088835	N/A	MMKEIQPWEYIVANQLNFLSGNVVQLLTEYARTKDIQLLEEACRDLGALTARERYLEQGFDADNSN*
Ga0098048_10039339	F082548	GGTGG	MRSPRAVAQDMVKAMDAAMKQVWDAENKKESDEGLKRQVFAHVCNNYARRGGLHGSSEAASRRSNIRE*