Scaffold Ga0098048_1002774

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1002774
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7274
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035492	Metagenome	172	N
F048573	Metagenome	148	Y
F077816	Metagenome	117	N
F090889	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100277413	F048573	GGAG	MPRMRRCPTCGSRLKHEDYTKRIEKKRLSRDKLTLESIDDMFDGASLYFEINDLDKYSFLSETEDIQDIVVRKMIRQYLHERFYKRGYGLKYLIGMIKNENSAYGLKKEYERKSLDRIPPKID*
Ga0098048_10027742	F077816	GGAGG	MKKAKKKAVFVGIADKIQIKSKKYVMNMLYKRAKKNPFMADKSYEEYLDYIKSQVKLLEGVEIKADNEEELYNALKSLGWLKEISVLAIYVITANYGIA*
Ga0098048_10027746	F035492	AGGAG	MADVGTILDSSKSQDSWYDPRQDFSGLMPEGEYKAHVKSLNIKRNVKVKNKFLSDIYEVVFTVAEENSEMEYQDDKGKSVSGSAFVGRDFRSKGFFRFKKPNKKEYPNLSENMGSNRSYMELVNSFGLNMEEVDGKFFLPELDASDIEGLPVIAKIYHEKWTTSEGEEKITPKASMIFNWEDGDKKEEELPF*
Ga0098048_10027747	F090889	GAGG	MVFKNIEDVEPMLKKISIEKTADMTEKDVEDFCDWVCAKATRLGFDVRVLDENKRLD*