Scaffold Ga0098048_1002507

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1002507
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7718
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F040126	Metagenome / Metatranscriptome	162	N
F041804	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100250711	F040126	N/A	MKKVPLFEDFVPVGFGGSNAANFGLGGGYKETGYNMDAIVGPVEQCSNHVAEQANSYESNDNPEHTAESYIKEAKKHINNKIDEACENYSMSESTLNEGTDIGSWNQAGIKGDSNALITTFVGPKDIEDFGLGRKCMQINVGRNYVQLNPADIVELKELLKNYKV*
Ga0098048_10025072	F041804	N/A	LVIEALTFKLSLDFFVYLKKYKIEVSKIRLGFYDDASGKTEFTDFSGIPEMELFYQSNYVPFDNCLVGDLVSVELFLGESDLYDFITEYRAEDLTDKFKLTSGSSFDIQRNSQRSVFTNRQIAFINRAVEDYRKYWNELSRIYTTGIYSPCYAQPGWSQGTWYLHQLREVFTSRNNEDKFPYDDATIINEPPE*
Ga0098048_10025079	F008425	N/A	MKKDKDITYKQFIDHMDKGNKVYMKKPRSWQKVWFWWESKRDKWFLNKAYDKREDGKVITEPSVWITAKQMESHMSFMFRQGYKYYIDE*